Publications

Data-Driven Equation-Free Dynamics Applied to Many-Protein Complexes: The Microtubule Tip Relaxation

Jiangbo Wu, Siva Dasetty, Daniel Beckett, Yihang Wang, Weizhi Xue, Tomasz Skóra, Tamara C. Bidone, Andrew L. Ferguson, Gregory A. Voth

Published in bioRxiv, 2024

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On the importance of the diffusivity gradient term in Brownian dynamics simulations

Tomasz Skóra

Published in Biophysical Journal, 2024

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Properties of Coherent Vibrational Wavepackets Critically Depend on the Method of Their Generation

Marcin Andrzejak, Grzegorz Mazur, Andrew J. Musser, Piotr Petelenz, Tomasz Skóra

Published in The Journal of Physical Chemistry C, 2024

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Contributions of the individual domains of αIIbβ3 integrin to its extension: Insights from multiscale modeling

Tomasz Skóra, Onkar Joshi, Anna Yarema, Richard D. Rabbitt, Tamara C. Bidone

Published in Cytoskeleton, 2024

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Size Sensitivity of Metabolite Diffusion in Macromolecular Crowds

Edyta Raczyłło, Dariusz Gołowicz, Tomasz Skóra, Krzysztof Kazimierczuk, Svyatoslav Kondrat

Published in Nano Letters, 2024

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Bottom-up coarse-grained model of microtubule dynamics: A bridge between length- and timescales

Tomasz Skóra, Daniel Beckett, Tamara Carla Bidone

Published in Biophysical Journal (abstract), 2024

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Minimal Coarse-Grained Model for Immunoglobulin G: Diffusion and Binding under Crowding

Tomasz Skóra, Edyta Słyk, Svyatoslav Kondrat

Published in The Journal of Physical Chemistry B, 2023

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Crowding-regulated binding of divalent biomolecules

Tomasz Skóra, Mathijs Janssen, Andreas Carlson, Svyatoslav Kondrat

Published in Physical Review Letters, 2023

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Diffusion and reactions under crowding: Theory and simulations

Tomasz Skóra

Published in PhD Thesis, 2022

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How macromolecules softness affects diffusion under crowding

Edyta Słyk, Tomasz Skóra, Svyatoslav Kondrat

Published in Soft Matter, 2022

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Conformation-changing enzymes and macromolecular crowding

Tomasz Skóra, Mihail N. Popescu, Svyatoslav Kondrat

Published in Physical Chemistry Chemical Physics, 2021

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Soft selection rules for femtosecond Pump–probe vibrational coherence spectroscopy

Marcin Andrzejak, Grzegorz Mazur, Tomasz Skóra, Piotr Petelenz

Published in The Journal of Physical Chemistry C, 2020

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Macromolecular crowding: how shape and interactions affect diffusion

Tomasz Skóra, Farzaneh Vaghefikia, Jörg Fitter, Svyatoslav Kondrat

Published in The Journal of Physical Chemistry B, 2020

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Limitations of generic chromophore concept for femtosecond vibrational coherences

Marcin Andrzejak, Tomasz Skóra, Piotr Petelenz

Published in The Journal of Physical Chemistry C, 2020

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Is vibrational coherence a byproduct of singlet exciton fission?

Marcin Andrzejak, Tomasz Skóra, Piotr Petelenz

Published in The Journal of Physical Chemistry C, 2018

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